1. Feifei Cui^#, Shuang Li^#, Zilong Zhang, Miaomiao Sui, Chen Cao, Abd El-Latif Hesham, Quan Zou*. DeepMC-iNABP: Deep learning for multiclass identification and classification of nucleic acid-binding proteins. Computational and Structural Biotechnology Journal. 2022, 20: 2020-2028. (IF=7.271，中科院二区)

2. Ruiqi Liu, Xiuhao Fu, Shankai Yan, Zilong Zhang, and Feifei Cui*. AIPPT: Predicts anti-inflammatory peptides using the most characteristic subset of bases and sequences by stacking ensemble learning strategies. IEEE International Conference on Bioinformatics and Biomedicine 2023. (CCF-B会议，已录用).

3. Zhibin Lv^#, Feifei Cui^#, Quan Zou*, Lichao Zhang*, Lei Xu*. Anticancer peptides prediction with deep representation learning features. Briefings in Bioinformatics. 2021, 22(5): 1-14. (IF=13.994，中科院一区Top 期刊)

4. Feifei Cui, Zilong Zhang, Chen Cao, Quan Zou, Dong Chen*, Xi Su*. Protein-DNA/RNA interactions: Machine intelligence tools and approaches in the era of artificial intelligence and big data. Proteomics. 2022, 3: e2100197. Doi: 10.1002/pmic.202100197. (IF=3.984)

5. Feifei Cui, Zilong Zhang, Quan Zou^*. Sequence representation approaches for sequence-based protein prediction tasks that use deep learning. Briefings in Functional Genomics. 2021, 20(1): 61-73. (IF=4.241)

6. Feifei Cui, Liang Cheng *, Quan Zou *. Briefings in functional genomics special section editorial: analysis of integrated multiple omics data. Briefings in Functional Genomics. 2021, 20(4): p. 196-197. (IF=4.241)

7. Feifei Cui, Quan Zou*. Biocomputing and Synthetic Biology in Cells: Cells Special Issue. Cells. 2020, 9(11): 2459. (IF=4.326)

8. Feifei Cui, Quan Zou*, Qin Ma, Leyi Wei, Jijun Tang and Dariusz Mrozek. IEEE Access Special Section Editorial: Feature Representation and Learning Methods With Applications in Large-Scale Biological Sequence Analysis. IEEE Access. 2021, 9: 33110-33119. (IF=3.367)

9. Feifei Cui, Murong Zhou, Quan Zou*. Computational biology and chemistry Special section editorial: Computational analyses for miRNA. Computational Biology and Chemistry. 2021, 91:107448. (IF=2.877)

10.Zilong Zhang, Feifei Cui, Wei Su, Lijun Dou, Anqi Xu, Chen Cao, Quan Zou*. webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration. Bioinformatics. 2022. Doi: 10.1093/bioinformatics/btac350. (IF=6.937，生物信息学顶刊)

11. Zilong Zhang, Feifei Cui, Chunyu Wang, Lingling Zhao*, Quan Zou*. Goals and approaches for each processing step for single-cell RNA sequencing data. Briefings in Bioinformatics. 2021, 22(4): bbaa314. (IF=13.994，中科院一区TOP期刊)

12. Zilong Zhang, Feifei Cui, Chen Lin, Lingling Zhao, Chunyu Wang, Quan Zou*. Critical downstream analysis steps for single-cell RNA sequencing data. Briefings in Bioinformatics. 2021, 22(5): bbab105. (IF=13.994，中科院一区TOP期刊)

13. Yunyun Su, Shiyu Yan, Chen Cao, Feifei Cui, Quan Zou, Zilong Zhang*. Human-Spa: An Online Platform Based on Spatial Transcriptome Data for Diseases of Human Systems. IEEE International Conference on Bioinformatics and Biomedicine 2023. (CCF-B会议，已录用)

14. Zilong Zhang, Feifei Cui, Song Wu*, Quan Zou*. Single-cell RNA analysis reveals the potential risk of organ-specific cell types vulnerable to SARS-CoV-2 infections. Computers in Biology and Medicine. 2021, 140: 105092. (IF=4.589

15. Zilong Zhang, Feifei Cui, Murong Zhou, Song Wu*, Quan Zou*, Bo Gao*. Single-cell RNA sequencing analysis identifies key genes in brain metastasis from lung adenocarcinoma. Current Gene Therapy. 2021, 21(4): 338-48.(IF=4.391)

16. Chen Cao, Jianhau Wang, Devin Kwok, Feifei Cui, Zilong Zhang, Da Zhao, Mulin Jun Li, Quan Zou*. webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study. Nucleic acids research. 2022, 50(D1): D1123-D1130. (IF=16.971，中科院分区一区TOP期刊)

17. Kunsen Lin, Youcai Zhao, Jia-Hong Kuo, Hao Deng, Feifei Cui, Zilong Zhang, Meilan Zhang, Chunlong Zhao, Xiaofeng Gao*, Tao Zhou*, Tao Wang*. Toward smarter management and recovery of municipal solid waste: A critical review on deep learning approaches. Journal of Cleaner Production, 2022: p. 130943. (IF=9.297，中科院分区一区)

18. Cao Chen, Shao Mengting, Zuo Chunman, Kwok Devin, Liu Lin, Ge Yuli, Zhang Zilong, Cui  Feifei, Chen Mingshuai, Fan Rui, Ding Yijie, Jiang Hangjin, Wang Guishen, Zou Quan*. RAVAR: a curated repository for rare variant-trait associations. Nucleic acids research. 2023. (IF=16.971，中科院分区一区TOP期刊, 已录用)